Just came back to empyrion, found a Talon warrior temple and entered. I love the design of the whole thing. but there is one thing that irks me a bit. In the... I call it the trial part are several loot crates that also are linked to the reputation with the talon which seems a bit counterintuitive. If I am already doing this challenge I should be able to keep the loot placed there without the talon becoming unfriendly. I guess this is because all containers of Faction buildings get automatically assinged to that faction by now? I had the same problem at the polaris sanctuary which I could loot just fine before. Perhaps this need a bit of fine tuning?
It is more a question what you value more: a good standing with the faction .. or looting their stuff (which they might not like). So it is actually intentional.